Peanut Genome Resource

Welcome and thank you for using The Peanut Genome Resource.
Please refer to the following important information before download Peanut Genome Resource:
   •    Annotation of all Gene IDs and sequences can be searched in Search function.
   •    All contents in Peanut Genome Resource is for ACADEMIC USE ONLY.
   •    If you have used the data from Peanut Genome Resource, please use the following citation: Zhuang, W. et al. The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nat. Genet. 51, 865-876 (2019). (PDF)

Download genomic data

  Genome sequences
  Protein sequences
  Genome annotation (GFF3)
  Raw data of Genome sequences
  Genomic data download

Accession ID or sample name, generation and URLs for access to raw data

Sample name	Status	Platform	Repository	Accession number/URL
Genome sequence and assembly data
Peanut chromosome	Pseudomolecules	Pacbio	NCBI	PRJNA480120
Peanut genome assembly (contigs)	Contig sequences	Pacbio	NCBI	FAFU001
Peanut genome assembly (split contigs)	Split contig sequences	Pacbio	FAFU	FAFU002
Peanut Shitouqi for Pacbio RNAseq	Pacbio reads	PacBio	FAFU	FAFU003
Peanut Shitouqi for HiC seq	Hic reads	Hi-C	FAFU	FAFU004
Peanut Shitouqi (zh.h0235)	Resequencing reads	HiSeq	FAFU	SRR7617992
Peanut Shitouqi (zh.h0235)	Resequencing reads	HiSeq	FAFU	SRR7617990
Peanut Shitouqi (zh.h0235)	Resequencing reads	HiSeq	FAFU	SRR7617989
Peanut Shitouqi (zh.h0235)	Resequencing reads	HiSeq	FAFU	SRR7617988
Peanut Shitouqi (zh.h0235)	Resequencing reads	HiSeq	FAFU	SRR7617987
Peanut Shitouqi (zh.h0235)	Resequencing reads	HiSeq	FAFU	SRR7617991
Illumina RNAseq data
Peanut Roots mixed (Root)	RNAseq reads	HiSeq	FAFU	FAFU005
Root tips (Rtip)	RNAseq reads	HiSeq	FAFU	FAFU006
root nodules (Rnod)	RNAseq reads	HiSeq	FAFU	FAFU007
Root and stem (RS)	RNAseq reads	HiSeq	FAFU	FAFU008
Stem of different stages (Stem)	RNAseq reads	HiSeq	FAFU	FAFU009
Stem tips (Stip)	RNAseq reads	HiSeq	FAFU	FAFU010
Leaves mixed (Leaf)	RNAseq reads	HiSeq	FAFU	FAFU011
Cotyledon (Cot)	RNAseq reads	HiSeq	FAFU	FAFU012
Inflorescence (F)	RNAseq reads	HiSeq	FAFU	FAFU013
Pegs in different stages (Peg)	RNAseq reads	HiSeq	FAFU	FAFU014
Pod pericarps of 10-20 DAP (10PC)	RNAseq reads	HiSeq	FAFU	FAFU015
Pod pericarps of 30-40 DAP (30PC)	RNAseq reads	HiSeq	FAFU	FAFU016
Pod pericarps of 50-60 DAP (50PC)	RNAseq reads	HiSeq	FAFU	FAFU017
Seed testa of 10-30 DAP (20PT)	RNAseq reads	HiSeq	FAFU	FAFU018
Seed testa of 40-60 DAP (40PT)	RNAseq reads	HiSeq	FAFU	FAFU019
Embryos of 10-20 DAP (10PE)	RNAseq reads	HiSeq	FAFU	FAFU020
Embryos of 20-30 DAP (20PE)	RNAseq reads	HiSeq	FAFU	FAFU021
Embryos of 30-40 DAP (30PE)	RNAseq reads	HiSeq	FAFU	FAFU022
Embryos of 40-60 DAP (50PE)	RNAseq reads	HiSeq	FAFU	FAFU023
Leaves treated with Low temperature (LT)	RNAseq reads	HiSeq	FAFU	FAFU024
Leaves of control (LTCK)	RNAseq reads	HiSeq	FAFU	FAFU025
Leaves of drought stress (Dry)	RNAseq reads	HiSeq	FAFU	FAFU026
Leaves of control (DryCK)	RNAseq reads	HiSeq	FAFU	FAFU027
Leaves of ABA treatments (ABA)	RNAseq reads	HiSeq	FAFU	FAFU028
Leaves of Br treatments (BR)	RNAseq reads	HiSeq	FAFU	FAFU029
Leaves of ETH treatments (ETH)	RNAseq reads	HiSeq	FAFU	FAFU030
Leaves of PAC treatments (PAC)	RNAseq reads	HiSeq	FAFU	FAFU031
Leaves of SA treatments (SA)	RNAseq reads	HiSeq	FAFU	FAFU032
Leaves of non treatments (HorCK)	RNAseq reads	HiSeq	FAFU	FAFU033
BSA illumina DNAseq data
Yueyou 92	DNA resequencing	HiSeq	FAFU	FAFU034
Xinhuixiaoli	DNA resequencing	HiSeq	FAFU	FAFU035
Big seed Bulk of 54 lines	DNA resequencing	HiSeq	FAFU	FAFU036
Small seed Bulk of 54 Lines	DNA resequencing	HiSeq	FAFU	FAFU037
Resequencing data
Fuhuasheng	Resequencing reads	HiSeq	SRA	PRJNA509951
Haihua 1	Resequencing reads	HiSeq	SRA	PRJNA509953
Baisha1016	Resequencing reads	HiSeq	SRA	PRJNA513228
Luhua 11	Resequencing reads	HiSeq	SRA	PRJNA513229
Shanyou 27	Resequencing reads	HiSeq	SRA	PRJNA513230
Zhonghua 16	Resequencing reads	HiSeq	SRA	PRJNA513232
Yuanza 9102	Resequencing reads	HiSeq	SRA	PRJNA513233
Minhua 6	Resequencing reads	HiSeq	SRA	PRJNA513234
Yuhua 23	Resequencing reads	HiSeq	SRA	PRJNA513240
Minhua 8	Resequencing reads	HiSeq	SRA	PRJNA513241
Hexianqingdou	Resequencing reads	HiSeq	SRA	PRJNA513420
Sunoleic95	Resequencing reads	HiSeq	SRA	PRJNA513422
Binyangdagouyao	Resequencing reads	HiSeq	SRA	PRJNA513423
Hexiandazidou	Resequencing reads	HiSeq	SRA	PRJNA513424
ICG6340	Resequencing reads	HiSeq	SRA	PRJNA513425
Liaoningshilihong	Resequencing reads	HiSeq	SRA	PRJNA513427
Arachis pintos	Resequencing reads	HiSeq	SRA	PRJNA513430
Arachis duranensis	Resequencing reads	HiSeq	SRA	PRJNA513431
Arachis stenosperma	Resequencing reads	HiSeq	SRA	PRJNA513432
Arachis batizocoii	Resequencing reads	HiSeq	SRA	PRJNA513433
Arachis ipaensis	Resequencing reads	HiSeq	SRA	PRJNA513436
Min6-A	Resequencing reads	HiSeq	SRA	PRJNA513437
Min8-B	Resequencing reads	HiSeq	SRA	PRJNA513438
Minhua 14	Resequencing reads	HiSeq	SRA	PRJNA513440
Arachis hypogaea	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis hypogaea	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis hypogaea	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis hypogaea	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis hypogaea	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis hypogaea	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis hypogaea	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis hypogaea	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis hypogaea	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis hypogaea	Resequencing reads	HiSeq	SRA	PRJNA490835
[A. magna (ICG 8960) x A. batizocoi (ICG 8209)]	Resequencing reads	HiSeq	SRA	PRJNA490835
[A. duranensis (ICG 8138) x A. batizocoi (ICG 13160)]	Resequencing reads	HiSeq	SRA	PRJNA490835
[A. duranensis (ICG 8123) x A. ipaensis (ICG 8206)]	Resequencing reads	HiSeq	SRA	PRJNA490835
[A. ipaensis (ICG 8206) x A. duranensis (ICG 8123)]	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis cardenasii	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis chiquitana	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis stenosperma	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis cardenasii	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis hoehnei	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis ipaensis	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis hoehnei	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis stenophylla	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis duranensis	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis duranensis	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis magna	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis batizocoi	Resequencing reads	HiSeq	SRA	PRJNA490835
Arachis batizocoi	Resequencing reads	HiSeq	SRA	PRJNA490835
Transcriptome sequencing data
Yueyou 92, RNA	RNAseq	Higseq	FAFU	FAFU038
Xinhuixiaoli, RNA	RNAseq	Higseq	FAFU	FAFU039
Big seed pod pericarp Bulk of 30 lines, mixed RNA	RNAseq	Higseq	FAFU	FAFU040
Small seed pod pericarp Bulk of 30 Lines, mixed RNA	RNAseq	Higseq	FAFU	FAFU041

Yueyou 92, RNA	RNAseq	Higseq	FAFU	FAFU042
Xinhuixiaoli, RNA	RNAseq	Higseq	FAFU	FAFU043
Big seed embryo Bulk of 30 lines, mixed RNA	RNAseq	Higseq	FAFU	FAFU044
Small seed embryo Bulk of 30 Lines, mixed RNA	RNAseq	Higseq	FAFU	FAFU045

Yueyou 92, RNA	RNAseq	Higseq	FAFU	FAFU046
Xinhuixiaoli, RNA	RNAseq	Higseq	FAFU	FAFU047
Red testa Bulk of 30 lines, mixed RNA	RNAseq	Higseq	FAFU	FAFU048
Pink testa Bulk of 30 Lines, mixed RNA	RNAseq	Higseq	FAFU	FAFU049
Selected genome DNA fragments sequencing data for genetic map construction
267 RIL lines (random selection)	Slafseq (illumina)	Higseq (Slafseq)	FAFU	FAFU050
314 RIL lines (random)	Slafseq (illumina)	Higseq (Slafseq)	FAFU	FAFU051

Download Map data

Mapping Population	Species	Publication	Ploidy and Genome	Size (KB)	Last updated	Download File
Yueyou92 x Xinhuixiaoli	A. hypogaea	Un-published	AABB	172	23/04/2017
RunnerIAC886_x_anartificial amphidiploid(A.ipaensis’K30076’_x_A. duranensis‘V14167’), associated with other 13 published maps.	A. hypogaea, A. duranensis x A. stenosperma	Kenta Shirasawa, et al., 2013	AABB	698	23/04/2017
Zhonghua 5 and ICGV86699	A. hypogaea	Xiaojing Zhou, et al., 2014	AABB	113	23/04/2017
SKF2_x_NYF2(F2(SatonokaxKintoki) x F2(YI-0311 xNakateyutaka))	A. hypogaea	Kenta Shirasawa, et al., 2012	AABB	277	23/04/2017
Zhonghua10 and ICG12625	A. hypogaea	HuangLi, et al., 2016	AABB	283	23/04/2017

Download QTL mapping data

File Name	Publication	Size (KB)	Last updated	Download File
Plant height QTL and map-QTL	Kenta Shirasawa, et al., 2013	28	23/04/2017
QTLs Mapping of 15 traits	Un-published	1108	23/04/2017

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seq_template.xlsx	Download excel file

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M0_1_L4_395X95	Download R1 file	Download R2 file
M0_2_L3_195A95	Download R1 file	Download R2 file
M0_2_L4_195A95	Download R1 file	Download R2 file
M0_3_L4_196A96	Download R1 file	Download R2 file
M24_1_L3_386X86	Download R1 file	Download R2 file
M24_2_L3_387X87	Download R1 file	Download R2 file
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M24_3_L3_388X88	Download R1 file	Download R2 file
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M48_1_L4_389X89	Download R1 file	Download R2 file
M48_2_L4_390X90	Download R1 file	Download R2 file
M48_3_L3_391X91	Download R1 file	Download R2 file
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M72_1_L3_392X92	Download R1 file	Download R2 file
M72_2_L3_393X93	Download R1 file	Download R2 file
M72_3_L4_394X94	Download R1 file	Download R2 file
M96_1_L3_303X03	Download R1 file	Download R2 file
M96_1_L3_304X04	Download R1 file	Download R2 file

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M96_1_L3_305X05	Download R1 file	Download R2 file
M96_1_L4_303X03	Download R1 file	Download R2 file
WT0_1_L4_185A85	Download R1 file	Download R2 file
WT0_2_L4_186A86	Download R1 file	Download R2 file
WT0_3_L3_187A87	Download R1 file	Download R2 file
WT24_1_L4_188A88	Download R1 file	Download R2 file
WT24_2_L3_189A89	Download R1 file	Download R2 file
WT24_3_L4_190A90	Download R1 file	Download R2 file
WT48_1_L4_191A91	Download R1 file	Download R2 file
WT48_2_L4_192A92	Download R1 file	Download R2 file
WT48_3_L3_193A93	Download R1 file	Download R2 file
WT72_1_L3_194A94	Download R1 file	Download R2 file
WT72_1_L3_301X01	Download R1 file	Download R2 file
WT72_1_L3_302X02	Download R1 file	Download R2 file
WT96_1_L4_383X83	Download R1 file	Download R2 file
WT96_2_L3_384X84	Download R1 file	Download R2 file
WT96_3_L3_385X85	Download R1 file	Download R2 file
WT96_3_L4_385X85	Download R1 file	Download R2 file

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